How to get proteomes used in treefam9?
Do you offer full proteomes download?
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1 Posted by mateus on 27 Nov, 2013 10:20 AM
Currently we don't provide a direct download from our web.
But you can easily retrieve that information from our MySQL server.
mysql -hmysql-treefam-public.ebi.ac.uk -P4418 -u treefam_ro
SELECT name,assembly,genebuild FROM treefam_production_9_69.genome_db;
SELECT * FROM member INNER JOIN sequence_cds ON member.member_id = sequence_cds.member_id where genome_db_id=1;
Or alternatively you can use our API (recommended).
Please let us know of any other queries.
2 Posted by Fabian on 14 Apr, 2014 07:45 AM
closed for now
Fabian closed this discussion on 14 Apr, 2014 07:45 AM.