How to get proteomes used in treefam9?

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20 Sep, 2013 06:15 PM

Do you offer full proteomes download?

  1. 1 Posted by mateus on 27 Nov, 2013 10:20 AM

    mateus's Avatar

    Hi lpryszcz,

    Currently we don't provide a direct download from our web.

    But you can easily retrieve that information from our MySQL server.

    mysql -P4418 -u treefam_ro
    SELECT name,assembly,genebuild FROM treefam_production_9_69.genome_db;
    SELECT * FROM member INNER JOIN sequence_cds ON member.member_id = sequence_cds.member_id where genome_db_id=1;

    Or alternatively you can use our API (recommended).

    Please let us know of any other queries.


  2. 2 Posted by Fabian on 14 Apr, 2014 07:45 AM

    Fabian's Avatar

    closed for now

  3. Fabian closed this discussion on 14 Apr, 2014 07:45 AM.

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