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How to get proteomes used in treefam9?

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lpryszcz

20 Sep, 2013 06:15 PM

Do you offer full proteomes download?
Bests,

1. 1 Posted by mateus on 27 Nov, 2013 10:20 AM

   

   Hi lpryszcz,

   Currently we don't provide a direct download from our web.

   But you can easily retrieve that information from our MySQL server.

   E.g.:
   mysql -hmysql-treefam-public.ebi.ac.uk -P4418 -u treefam_ro
   SELECT name,assembly,genebuild FROM treefam_production_9_69.genome_db;
   SELECT * FROM member INNER JOIN sequence_cds ON member.member_id = sequence_cds.member_id where genome_db_id=1;

   Or alternatively you can use our API (recommended).

   Please let us know of any other queries.

   Mateus.

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2. 2 Posted by Fabian on 14 Apr, 2014 07:45 AM

   

   closed for now

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3. Fabian closed this discussion on 14 Apr, 2014 07:45 AM.