tag:treefam.tenderapp.com,2013-02-16:/discussions/questions/79-treefam-a-downloadTreeFam: Discussion 2018-10-19T08:27:58Ztag:treefam.tenderapp.com,2013-02-16:Comment/400221142016-06-02T11:35:54Z2016-06-02T11:35:54ZTreeFam-A Download<div><p>Hi Bas,</p>
<p>The distinction between TreeFam-A and TreeFam-B does not apply
to the<br>
last release of TreeFam</p>
<p>Regards,<br>
Matthieu</p></div>Matthieu Muffatotag:treefam.tenderapp.com,2013-02-16:Comment/400221142016-06-02T11:44:10Z2016-06-02T11:44:11ZTreeFam-A Download<div><p>Thank you Matthieu,</p>
<p>I assume the latest release is more akin to TreeFam-B and no
longer contains manually curated data?</p>
<p>In a recent paper (see below) regarding orthologs it was stated
that a Treefam-A dataset was used. They specifically state
Treefam-A version 7 and refer to this website (<a href="http://www.treefam.org/">http://www.treefam.org/</a>).</p>
<p>Are older version of TreeFam still available for download?
(specifically the version mentioned above)</p>
<p>Altenhoff et al. Standardized benchmarking in the quest for
orthologs Nature Methods 13, 425–430 (2016)</p>
<p>Best wishes,</p>
<p>Bas</p></div>Bas Verbruggentag:treefam.tenderapp.com,2013-02-16:Comment/400221142016-06-02T13:40:16Z2016-06-02T13:40:16ZTreeFam-A Download<div><p>Hi Bas,</p>
<p>This is correct: all the families should be considered as
TreeFam-B</p>
<p>In this paper's analysis, they downloaded the data from the
previous<br>
databases, which are still available. The website, on the other
hand,<br>
only shows the latest data</p>
<p>The database is on a MySQL server available at<br>
mysql-treefam-public.ebi.ac.uk on port 4418 with the user
"treefam_ro"<br>
and no password</p>
<p>Matthieu</p></div>Matthieu Muffatotag:treefam.tenderapp.com,2013-02-16:Comment/400221142016-06-02T13:51:06Z2016-06-02T13:51:08ZTreeFam-A Download<div><p>Thank you very much for your help Matthieu. I'll try to fetch
the data from the MySQL server.</p></div>Bas Verbruggen