tag:treefam.tenderapp.com,2013-02-16:/discussions/problems/14-pfam-and-treefam-results-differTreeFam: Discussion 2015-06-08T13:59:47Ztag:treefam.tenderapp.com,2013-02-16:Comment/269865462013-05-28T09:05:48Z2013-05-28T09:05:48Zpfam and treefam results differ<div><p>Hi Jen.<br>
There was a bug in the generation of some of the big families
(>400 sequences) and they were not included in the HMM
profile.<br>
Right now we are working on fixing it.<br>
We will get back to you as soon as this is fixed.<br>
Thank you for your contribution.<br>
Best regards,<br>
Mateus.</p></div>mateustag:treefam.tenderapp.com,2013-02-16:Comment/269865462013-06-05T13:27:20Z2013-06-05T13:27:20Zpfam and treefam results differ<div><p>Hi Jen.<br>
We just fixed this problem.<br>
Some of our big alignments were failing to execute in our cluster
due to memory limitations thus the HMM profiles were not being
generated.<br>
Now, you should find the TreeFam family TF321368 as the first hit
of your sequence.<br>
Best regards,<br>
Mateus.</p></div>mateustag:treefam.tenderapp.com,2013-02-16:Comment/269865462013-06-05T13:34:58Z2013-06-05T13:34:58Zpfam and treefam results differ<div><p>Thats great! I plant to show the treefam results in a gene
annotation page for a sequencing/community annotation project. I
hope to write a script that will send a fasta sequence to the site
and return the resulting tree for me to hyperlink. For now I am
collecting the treefam sites manually but database planning begins
next week. Best, Jen</p></div>Jennifer Wyffelstag:treefam.tenderapp.com,2013-02-16:Comment/269865462013-06-05T14:01:42Z2013-06-05T14:01:42Zpfam and treefam results differ<div><p>Hi Jen.<br>
If you have any queries please do not hesitate in contacting us.
We’ll be pleased to help.<br>
Best,<br>
Mateus.</p></div>mateus