TreeFam.hmm

feseha's Avatar

feseha

24 Feb, 2015 04:09 PM

Hello;
I cloned the treefam as per the instruction on github. Everything seems to be in the right place but when I run the example I get the following error message:
"FATAL: can't find TreeFam.hmm and/or TreeFam.hmm binaries in "example/hmm_lib" at treefam_scan.pl line 104."

I would appreciate any help.

  1. 1 Posted by Nick Long on 26 Apr, 2015 04:36 AM

    Nick Long's Avatar

    I just overcame the same issue

    If you followed the README exactly, one of the flags is
    -hmm_file TreeFam.hmm

    but you want it to say

    -hmm_file TreeFam

    Or the complete name you renamed it to, minus the extensions of the other files that hmmpress creates.

  2. Support Staff 2 Posted by Matthieu Muffat... on 09 Jun, 2015 03:35 PM

    Matthieu Muffato's Avatar

    Hi Nick,

    Sorry for the long reply, but we were not receiving notifications from the forum (this is now fixed !).
    Thank you for your email, we have now updated the documentation accordingly

    Regards,
    Matthieu

  3. Matthieu Muffato closed this discussion on 09 Jun, 2015 03:35 PM.

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