tag:treefam.tenderapp.com,2013-02-16:/discussions/problems/42-about-the-nhx-formatTreeFam: Discussion 2018-10-19T08:27:58Ztag:treefam.tenderapp.com,2013-02-16:Comment/378059612015-09-04T10:24:32Z2015-09-04T10:24:32ZAbout the NHX format<div><p>Dear Fang-Yu</p>
<p>There was indeed in the Ensembl Genomes release of Tribolium
castaneum. All their gene names were prefixed with TCOGS2. It has
been fixed since on their side and the next TreeFam release will
use the correct names.</p>
<p>In the mean-time, I'd suggest you remove the "TCOGS2:" string
from all the files, with:<br>
find treefam_family_data/ -type f | xargs sed -i 's/<a>TCOGS2://g&#39</a>;<br>
(it may take some time to run !)</p>
<p>Best regards,<br>
Matthieu</p></div>Matthieu Muffatotag:treefam.tenderapp.com,2013-02-16:Comment/378059612015-09-09T14:37:37Z2015-09-09T14:37:38ZAbout the NHX format<div><p>Dear Matthieu,</p>
<p>Thank you very much for the useful information! :-) I will do as
you suggested to remove the "TCOGS2:" string from all the
files.</p>
<p>Best wishes,<br>
Fang-Yu</p></div>Fang-Yu Rao