Treefam error

Kritika's Avatar

Kritika

23 Mar, 2017 11:04 PM

Hi,
    I am running TreeFam on a set of identified proteins using the perl script treefam_scan.pl. The example test runs successfully, but when I do a run with my data, I get the following error "Failed to parse hmmsearch results |[ok]
| in header section"

Any help would be greatly appreciated.

Thank you

Regards
Kritika

  1. Support Staff 1 Posted by Matthieu Muffat... on 07 Apr, 2017 03:53 PM

    Matthieu Muffato's Avatar

    Hi Krikita,

    It would be useful if you could share a minimal data file that causes
    the error, together with the command-line you used.
    I would like to check what is happening under the hood, and whether
    there is a case that is not handled by the script

    Thank you,
    Matthieu

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