tag:treefam.tenderapp.com,2013-02-16:/discussions/questions/64-cds-sequencesTreeFam: Discussion 2014-04-14T07:51:00Ztag:treefam.tenderapp.com,2013-02-16:Comment/325276902014-04-11T23:11:41Z2014-04-11T23:11:43Zcds sequences<div><p>Hi,</p>
<p>In the cds file of each family, are the sequences acquired by
back translating or are they real cds sequences? in case of
backtranslating how did you choose between the trinucletides?</p></div>Fayetag:treefam.tenderapp.com,2013-02-16:Comment/325276902014-04-14T07:50:57Z2014-04-14T07:50:57Zcds sequences<div><p>Dear Faye,<br>
thanks for your question.<br>
We get all our CDS sequences from ensembl. Both protein and CDS are
used in the tree building process. We use TreeBest to build a CDS
alignment. It uses the protein alignment as a guide.</p>
<p>Does that help?</p>
<p>Cheers,<br>
Fabian</p></div>Fabian