tag:treefam.tenderapp.com,2013-02-16:/discussions/questions/66-consensus-sequenceTreeFam: Discussion 2015-06-08T14:06:37Ztag:treefam.tenderapp.com,2013-02-16:Comment/325277072014-04-14T07:54:14Z2014-04-14T07:54:14Zconsensus sequence<div><p>Dear Faye,<br>
thanks for your question.<br>
I assume by consensus sequence for a family you mean the emitted
sequence of a family's HMM. If you want that information, you can
just download a family HMM and use "hmmemit" from the HMMer
software package to emit a consensus sequence.<br>
Alternatively, you can download either the protein or CDS alignment
and use BioPerl to get the consensus sequence (<a href=
"http://www.bioperl.org/wiki/HOWTO:AlignIO_and_SimpleAlign">http://www.bioperl.org/wiki/HOWTO:AlignIO_and_SimpleAlign</a>)</p>
<p>Hope that help.</p>
<p>Cheers,<br>
Fabian</p></div>Fabiantag:treefam.tenderapp.com,2013-02-16:Comment/325277072014-04-16T16:12:50Z2014-04-16T16:12:51Zconsensus sequence<div><p>Thanks Fabian for your replies,<br>
It seems like we cannot download your HMM, since when you click on
them you get 'Page Not Found' error like :<br>
<a href=
"http://www.treefam.org/family/TF101007/hmm">http://www.treefam.org/family/TF101007/hmm</a></p>
<p>And it's not also available in your bulk download pages
either</p></div>Faye